Egon Willighagen
@egonw@social.edu.nl  路  activity timestamp 6 hours ago

Fwd: "Unleashing 4 million IUPAC names into the wild" https://chembl.blogspot.com/2025/08/unleashing-4-million-iupac-names-into.html

"In support of Egon Willighagen's 'One Million IUPAC Names' project, we have just released more than 4 million IUPAC names text-mined from patents. Here are the details as listed on Zenodo:"

#cheminformatics #chemistry #iupac #openscience
Egon Willighagen
@egonw@social.edu.nl  路  activity timestamp 6 hours ago

Fwd: "Unleashing 4 million IUPAC names into the wild" https://chembl.blogspot.com/2025/08/unleashing-4-million-iupac-names-into.html

"In support of Egon Willighagen's 'One Million IUPAC Names' project, we have just released more than 4 million IUPAC names text-mined from patents. Here are the details as listed on Zenodo:"

#cheminformatics #chemistry #iupac #openscience
WikiPathways
@wikipathways@fosstodon.org  路  activity timestamp 3 days ago

New release of PFOCR! Over 6,500 new pathway figures added for a total of 116,972. These include 147,974 unique genes across hundreds of species (18,775 human), 7,855 unique ChEBI, and 748 unique disease DOIDs.

https://pfocr.wikipathways.org

Using the search tool, you can specify a gene, keyword and year, e.g., all the pathway figures from 2025 so far that mention APOE4: https://pfocr.wikipathways.org/search.html?query=APOE4%202025

#biology #chemistry #bioinformatics

Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
WikiPathways
@wikipathways@fosstodon.org  路  activity timestamp 3 days ago

New release of PFOCR! Over 6,500 new pathway figures added for a total of 116,972. These include 147,974 unique genes across hundreds of species (18,775 human), 7,855 unique ChEBI, and 748 unique disease DOIDs.

https://pfocr.wikipathways.org

Using the search tool, you can specify a gene, keyword and year, e.g., all the pathway figures from 2025 so far that mention APOE4: https://pfocr.wikipathways.org/search.html?query=APOE4%202025

#biology #chemistry #bioinformatics

Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
Page of PFOCR where article titles are listed that have been digitized in WikiPathways, along with a badge at the end showing the matching WikiPathways WP identifier. For example, the top item reads: Regulation of D-secretase in neurodegenerative diseases (2020, Mus musculus,Rattus norvegicus,Homo sapiens,Sar) WikiPathways WP5372
Blue Obelisk
@blueobelisk@fosstodon.org  路  activity timestamp 3 days ago

Oscar4 5.3.0 has been released: https://github.com/BlueObelisk/oscar4/releases/tag/5.3.0

"OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles. It can be used to identify chemical names, reaction names, ontology terms, enzymes and chemical prefixes and adjectives, and chemical data such as state, yield, IR, NMR and mass spectra and elemental analyses."

#cheminformatics #chemistry
Blue Obelisk
@blueobelisk@fosstodon.org  路  activity timestamp 3 days ago

Oscar4 5.3.0 has been released: https://github.com/BlueObelisk/oscar4/releases/tag/5.3.0

"OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles. It can be used to identify chemical names, reaction names, ontology terms, enzymes and chemical prefixes and adjectives, and chemical data such as state, yield, IR, NMR and mass spectra and elemental analyses."

#cheminformatics #chemistry